A Discrete View on Fold Space

Manfred J. Sippl, Stefan J Suhrer, Markus Gruber, Markus Wiederstein, Stefan Suhrer

    Research output: Contribution to journalArticle

    Abstract

    The database of known protein structures contains an overwhelming number of structural similarities that frequently point to intriguing biological relationships. The similarities are often difficult to spot, and once detected their comprehension needs proper visualization. Here we introduce the new concept of a Fold Space Navigator, a user interface enabling the efficient navigation through fold space and the instantaneous visualization of pairwise structure similarities.

    AVAILABILITY: The Fold Space Navigator is accessible as a public web service at http://services.came.sbg.ac.at

    Translated title of the contributionA Discrete View on Fold Space
    Original languageEnglish
    Pages (from-to)870-871
    Number of pages2
    JournalBioinformatics
    Volume24
    Issue number6
    DOIs
    Publication statusPublished - 15 Mar 2008

    Fields of Science and Technology Classification 2012

    • 106 Biology

    Keywords

    • Algorithms
    • Amino Acid Sequence
    • Computer Simulation
    • Databases, Protein
    • Information Storage and Retrieval/methods
    • Models, Chemical
    • Models, Molecular
    • Molecular Sequence Data
    • Protein Folding
    • Proteins/chemistry
    • Sequence Analysis, Protein/methods
    • Software
    • User-Computer Interface

    Cite this

    Sippl, M. J., Suhrer, S. J., Gruber, M., Wiederstein, M., & Suhrer, S. (2008). A Discrete View on Fold Space. Bioinformatics, 24(6), 870-871. https://doi.org/10.1093/bioinformatics/btn020