A note on difficult structure alignment problems

Manfred J Sippl, Markus Wiederstein

    Research output: Contribution to journalArticle

    Abstract

    Progress in structural biology depends on several key technologies. In particular tools for alignment and superposition of protein structures are indispensable. Here we describe the use of the TopMatch web service, an effective computational tool for protein structure alignment, for the visualization of structural similarities, and for highlighting relationships found in protein classifications. We provide several instructive examples.

    AVAILABILITY: TopMatch is available as a public web service at http://services.came.sbg.ac.at.

    Translated title of the contributionA Note on Difficult Structure Alignment Problems
    Original languageEnglish
    Pages (from-to)426-7
    Number of pages2
    JournalBioinformatics
    Volume24
    Issue number3
    DOIs
    Publication statusPublished - 1 Feb 2008

    Bibliographical note

    doi:10.1093/bioinformatics/btm622

    Fields of Science and Technology Classification 2012

    • 106 Biology

    Keywords

    • Algorithms
    • Amino Acid Sequence
    • Internet
    • Molecular Sequence Data
    • Proteins/chemistry
    • Sequence Alignment/methods
    • Sequence Analysis, Protein/methods
    • Software

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