DeSignate Tool

Thomas Hütter; Nikolaus Augsten; Sabine Agatha; Manuel Kocher; Maximilian Ganser; Merima Halkic

DeSignate Tool

Thomas Hütter (Photographer), Nikolaus Augsten (Other), Sabine Agatha (Other), Manuel Kocher (Developer), Maximilian Ganser (Designer), Merima Halkic (Other)

Research output: Non-textual form › Software

Abstract

DeSignate is an innovative tool for detecting diagnostic molecular characters (= signature characters) and their positions for complementing taxon diagnoses. The analysis is based on a novel representation of the gene sequence data, which enables a ranking of all alignment positions (= molecular character) according to their classification and diagnostic relevance.

DeSignate is also able to detect diagnostic character combinations (= combined alignment positions). The tool guides the user step-by-step through the analysis and presents the results without need to post-process the output data.

Translated title of the contribution	DeSigNate
Original language	English
Publication status	Published - 2020

Fields of Science and Technology Classification 2012

102 Computer Sciences
106 Biology

Cite this

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title = "DeSignate Tool",

abstract = "DeSignate is an innovative tool for detecting diagnostic molecular characters (= signature characters) and their positions for complementing taxon diagnoses. The analysis is based on a novel representation of the gene sequence data, which enables a ranking of all alignment positions (= molecular character) according to their classification and diagnostic relevance.DeSignate is also able to detect diagnostic character combinations (= combined alignment positions). The tool guides the user step-by-step through the analysis and presents the results without need to post-process the output data.",

author = "Thomas H{\"u}tter and Nikolaus Augsten and Sabine Agatha and Manuel Kocher and Maximilian Ganser and Merima Halkic",

year = "2020",

language = "English",

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TY - ADVS

T1 - DeSignate Tool

A2 - Hütter, Thomas

A2 - Augsten, Nikolaus

A2 - Agatha, Sabine

A2 - Kocher, Manuel

A2 - Ganser, Maximilian

A2 - Halkic, Merima

PY - 2020

Y1 - 2020

N2 - DeSignate is an innovative tool for detecting diagnostic molecular characters (= signature characters) and their positions for complementing taxon diagnoses. The analysis is based on a novel representation of the gene sequence data, which enables a ranking of all alignment positions (= molecular character) according to their classification and diagnostic relevance.DeSignate is also able to detect diagnostic character combinations (= combined alignment positions). The tool guides the user step-by-step through the analysis and presents the results without need to post-process the output data.

AB - DeSignate is an innovative tool for detecting diagnostic molecular characters (= signature characters) and their positions for complementing taxon diagnoses. The analysis is based on a novel representation of the gene sequence data, which enables a ranking of all alignment positions (= molecular character) according to their classification and diagnostic relevance.DeSignate is also able to detect diagnostic character combinations (= combined alignment positions). The tool guides the user step-by-step through the analysis and presents the results without need to post-process the output data.

UR - http://designate.dbresearch.uni-salzburg.at

UR - https://github.com/DatabaseGroup/DeSignate

M3 - Software

ER -

DeSignate Tool

Abstract

Fields of Science and Technology Classification 2012

Other files and links

Disclosing the Biodiversity and Evolutionary Relationships of Planktonic Ciliates (Alveolata, Ciliophora, Oligotrichea) Based on Big Data from the Northwest Pacific Biodiversity Hotspot and the North Atlantic

FFTED: Fast and Flexible Tree Edit Distance

Similarity Queries over Hierarchical Data

DeSignate: detecting signature characters in gene sequence alignments for taxon diagnoses

DeSigNate: A user-friendly tool to detect signature nucleotides for taxon diagnoses

Poster presentation award (1st place) at the 40th DGP meeting 2021

DeSignate: detecting signature characters in gene sequence alignments for taxon diagnoses.

Cite this

DeSignate Tool

Abstract

Fields of Science and Technology Classification 2012

Other files and links

Projects

Disclosing the Biodiversity and Evolutionary Relationships of Planktonic Ciliates (Alveolata, Ciliophora, Oligotrichea) Based on Big Data from the Northwest Pacific Biodiversity Hotspot and the North Atlantic

FFTED: Fast and Flexible Tree Edit Distance

Research output

Similarity Queries over Hierarchical Data

DeSignate: detecting signature characters in gene sequence alignments for taxon diagnoses

DeSigNate: A user-friendly tool to detect signature nucleotides for taxon diagnoses

Prizes

Poster presentation award (1st place) at the 40th DGP meeting 2021

Activities

DeSignate: detecting signature characters in gene sequence alignments for taxon diagnoses.

Cite this